HL_6SKF_114

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMG)GAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_114 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.1947

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6SKF|1|BA|OMG|1106
6SKF|1|BA|G|1107
6SKF|1|BA|A|1108
6SKF|1|BA|A|1109
6SKF|1|BA|C|1110
6SKF|1|BA|A|1111
6SKF|1|BA|A|1112
6SKF|1|BA|C|1113

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e