HL_6SKF_119

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMU)GAGAAG

Length

7 nucleotides

Bulged bases

6SKF|1|BA|A|1780

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_119 not in the Motif Atlas

Geometric match to HL_5TBW_042

Geometric discrepancy: 0.1463

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SKF|1|BA|OMU|1776
6SKF|1|BA|G|1777
6SKF|1|BA|A|1778
6SKF|1|BA|G|1779
6SKF|1|BA|A|1780
6SKF|1|BA|A|1781
6SKF|1|BA|G|1782

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e