HL_6SKF_120

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(5MU)UUAGUAAAAA

Length

11 nucleotides

Bulged bases

6SKF|1|BA|A|1908, 6SKF|1|BA|G|1909, 6SKF|1|BA|U|1910, 6SKF|1|BA|A|1914

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_120 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.1191

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

6SKF|1|BA|5MU|1905
6SKF|1|BA|U|1906
6SKF|1|BA|U|1907
6SKF|1|BA|A|1908
6SKF|1|BA|G|1909
6SKF|1|BA|U|1910
6SKF|1|BA|A|1911
6SKF|1|BA|A|1912
6SKF|1|BA|A|1913
6SKF|1|BA|A|1914
6SKF|1|BA|A|1915

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Bh

50S ribosomal protein L37e