HL_6SNT_024

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6SNT|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1328

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SNT|1|1|C|1076
6SNT|1|1|U|1077
6SNT|1|1|U|1078
6SNT|1|1|A|1079
6SNT|1|1|A|1080
6SNT|1|1|U|1081
6SNT|1|1|U|1082
6SNT|1|1|G|1083

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ao

60S ribosomal protein L29

Chain k

60S ribosomal protein L5

Chain z

60S ribosomal protein L21-A