HL_6SNT_027

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6SNT|1|1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.2512

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6SNT|1|1|C|1239
6SNT|1|1|A|1240
6SNT|1|1|U|1241
6SNT|1|1|G|1242
6SNT|1|1|G|1243
6SNT|1|1|A|1244
6SNT|1|1|A|1245
6SNT|1|1|G|1246
6SNT|1|1|U|1247
6SNT|1|1|C|1248
6SNT|1|1|G|1249

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains