HL_6SNT_050

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6SNT|1|1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0746

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SNT|1|1|U|2292
6SNT|1|1|C|2293
6SNT|1|1|U|2294
6SNT|1|1|A|2295
6SNT|1|1|A|2296
6SNT|1|1|U|2297
6SNT|1|1|U|2298
6SNT|1|1|A|2299
6SNT|1|1|G|2300

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

60S ribosomal protein L23-A