HL_6SNT_080

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6SNT|1|2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_080 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.116

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6SNT|1|2|G|330
6SNT|1|2|A|331
6SNT|1|2|U|332
6SNT|1|2|A|333
6SNT|1|2|G|334
6SNT|1|2|U|335
6SNT|1|2|G|336
6SNT|1|2|G|337
6SNT|1|2|C|338

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A