HL_6SNT_110
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6SNT|1|3|C|84, 6SNT|1|3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_110 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2034
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6SNT|1|3|U|69
6SNT|1|3|G|70
6SNT|1|3|A|71
6SNT|1|3|A|72
6SNT|1|3|U|73
6SNT|1|3|U|74
6SNT|1|3|G|75
6SNT|1|3|C|76
6SNT|1|3|A|77
6SNT|1|3|G|78
6SNT|1|3|A|79
6SNT|1|3|A|80
6SNT|1|3|U|81
6SNT|1|3|U|82
6SNT|1|3|C|83
6SNT|1|3|C|84
6SNT|1|3|G|85
6SNT|1|3|U|86
6SNT|1|3|G|87
6SNT|1|3|A|88
6SNT|1|3|A|89
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain ai
- 60S ribosomal protein L35-A
- Chain ar
- 60S ribosomal protein L26-A
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