HL_6SPB_012

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCACGAGAAAC

Length

11 nucleotides

Bulged bases

6SPB|1|A|G|377, 6SPB|1|A|A|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPB_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1779

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SPB|1|A|G|373
6SPB|1|A|C|374
6SPB|1|A|A|375
6SPB|1|A|C|376
6SPB|1|A|G|377
6SPB|1|A|A|378
6SPB|1|A|G|379
6SPB|1|A|A|380
6SPB|1|A|A|381
6SPB|1|A|A|382
6SPB|1|A|C|383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28