HL_6SPD_045
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6SPD|1|A|A|1767, 6SPD|1|A|U|1768, 6SPD|1|A|U|1769, 6SPD|1|A|A|1773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPD_045 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.162
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6SPD|1|A|U|1764
6SPD|1|A|U|1765
6SPD|1|A|U|1766
6SPD|1|A|A|1767
6SPD|1|A|U|1768
6SPD|1|A|U|1769
6SPD|1|A|A|1770
6SPD|1|A|A|1771
6SPD|1|A|A|1772
6SPD|1|A|A|1773
6SPD|1|A|A|1774
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
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