HL_6SPF_006

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6SPF|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.077

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SPF|1|A|G|194
6SPF|1|A|A|195
6SPF|1|A|A|196
6SPF|1|A|A|197
6SPF|1|A|C|198
6SPF|1|A|A|199
6SPF|1|A|U|200
6SPF|1|A|C|201

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28