HL_6SPF_009

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6SPF|1|A|A|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_009 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1164

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6SPF|1|A|C|299
6SPF|1|A|U|300
6SPF|1|A|G|301
6SPF|1|A|G|302
6SPF|1|A|A|303
6SPF|1|A|A|304
6SPF|1|A|A|305
6SPF|1|A|G|306

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24