HL_6SPF_031
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GUGAAAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPF_031 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.1183
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6SPF|1|A|G|1268
6SPF|1|A|U|1269
6SPF|1|A|G|1270
6SPF|1|A|A|1271
6SPF|1|A|A|1272
6SPF|1|A|A|1273
6SPF|1|A|A|1274
6SPF|1|A|A|1275
6SPF|1|A|C|1276
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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