HL_6SPF_050

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

6SPF|1|A|C|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_050 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3903

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6SPF|1|A|A|2129
6SPF|1|A|C|2130
6SPF|1|A|G|2131
6SPF|1|A|C|2132
6SPF|1|A|C|2133
6SPF|1|A|A|2134
6SPF|1|A|G|2135
6SPF|1|A|U|2136

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains