HL_6SPF_053

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6SPF|1|A|A|2255, 6SPF|1|A|C|2262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1434

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6SPF|1|A|C|2251
6SPF|1|A|U|2252
6SPF|1|A|A|2253
6SPF|1|A|A|2254
6SPF|1|A|A|2255
6SPF|1|A|G|2256
6SPF|1|A|A|2257
6SPF|1|A|G|2258
6SPF|1|A|U|2259
6SPF|1|A|A|2260
6SPF|1|A|A|2261
6SPF|1|A|C|2262
6SPF|1|A|G|2263

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27