HL_6SPF_058

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGUAUGGAAG

Length

10 nucleotides

Bulged bases

6SPF|1|A|U|2393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0652

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6SPF|1|A|U|2391
6SPF|1|A|G|2392
6SPF|1|A|U|2393
6SPF|1|A|A|2394
6SPF|1|A|U|2395
6SPF|1|A|G|2396
6SPF|1|A|G|2397
6SPF|1|A|A|2398
6SPF|1|A|A|2399
6SPF|1|A|G|2400

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15