HL_6SPF_065

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6SPF|1|A|G|2738, 6SPF|1|A|C|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0872

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6SPF|1|A|C|2732
6SPF|1|A|U|2733
6SPF|1|A|G|2734
6SPF|1|A|A|2735
6SPF|1|A|A|2736
6SPF|1|A|A|2737
6SPF|1|A|G|2738
6SPF|1|A|C|2739
6SPF|1|A|A|2740
6SPF|1|A|U|2741
6SPF|1|A|C|2742
6SPF|1|A|U|2743
6SPF|1|A|A|2744
6SPF|1|A|A|2745
6SPF|1|A|G|2746

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13