HL_6SPF_097

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

ACGUAAGU

Length

8 nucleotides

Bulged bases

6SPF|1|A|U|1163, 6SPF|1|A|A|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_097 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.2105

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6SPF|1|A|A|1160
6SPF|1|A|C|1161
6SPF|1|A|G|1162
6SPF|1|A|U|1163
6SPF|1|A|A|1164
6SPF|1|A|A|1165
6SPF|1|A|G|1166
6SPF|1|A|U|1167

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains