HL_6SPF_103

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGGUAAAGGCC

Length

11 nucleotides

Bulged bases

6SPF|1|a|G|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_103 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3515

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6SPF|1|a|G|252
6SPF|1|a|G|253
6SPF|1|a|G|254
6SPF|1|a|U|255
6SPF|1|a|A|256
6SPF|1|a|A|257
6SPF|1|a|A|258
6SPF|1|a|G|259
6SPF|1|a|G|260
6SPF|1|a|C|261
6SPF|1|a|C|262

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20