HL_6SPG_047

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGUAACUAUAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_047 not in the Motif Atlas

Geometric match to HL_6M0X_002

Geometric discrepancy: 0.3353

The information below is about HL_6M0X_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6SPG|1|A|C|1896
6SPG|1|A|G|1897
6SPG|1|A|U|1898
6SPG|1|A|A|1899
6SPG|1|A|A|1900
6SPG|1|A|C|1901
6SPG|1|A|U|1902
6SPG|1|A|A|1903
6SPG|1|A|U|1904
6SPG|1|A|A|1905
6SPG|1|A|A|1906
6SPG|1|A|C|1907
6SPG|1|A|G|1908

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA