HL_6SPG_048

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6SPG|1|A|U|1938, 6SPG|1|A|U|1942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1571

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6SPG|1|A|G|1936
6SPG|1|A|G|1937
6SPG|1|A|U|1938
6SPG|1|A|A|1939
6SPG|1|A|A|1940
6SPG|1|A|G|1941
6SPG|1|A|U|1942
6SPG|1|A|U|1943
6SPG|1|A|C|1944

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA