HL_6SPG_050

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GACGCCAGUU

Length

10 nucleotides

Bulged bases

6SPG|1|A|C|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_050 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5996

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

6SPG|1|A|G|2128
6SPG|1|A|A|2129
6SPG|1|A|C|2130
6SPG|1|A|G|2131
6SPG|1|A|C|2132
6SPG|1|A|C|2133
6SPG|1|A|A|2134
6SPG|1|A|G|2135
6SPG|1|A|U|2136
6SPG|1|A|U|2137

Current chains

Chain A

23S ribosomal RNA

Nearby chains