HL_6SPG_053

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6SPG|1|A|A|2255, 6SPG|1|A|C|2262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1499

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6SPG|1|A|C|2251
6SPG|1|A|U|2252
6SPG|1|A|A|2253
6SPG|1|A|A|2254
6SPG|1|A|A|2255
6SPG|1|A|G|2256
6SPG|1|A|A|2257
6SPG|1|A|G|2258
6SPG|1|A|U|2259
6SPG|1|A|A|2260
6SPG|1|A|A|2261
6SPG|1|A|C|2262
6SPG|1|A|G|2263

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27