HL_6SPG_054

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGUCGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_054 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.4228

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SPG|1|A|G|2290
6SPG|1|A|G|2291
6SPG|1|A|U|2292
6SPG|1|A|C|2293
6SPG|1|A|G|2294
6SPG|1|A|G|2295
6SPG|1|A|A|2296
6SPG|1|A|A|2297
6SPG|1|A|A|2298
6SPG|1|A|U|2299
6SPG|1|A|C|2300

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5