HL_6SPG_095

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6SPG|1|a|G|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_095 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1794

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6SPG|1|a|G|1083
6SPG|1|a|U|1084
6SPG|1|a|U|1085
6SPG|1|a|A|1086
6SPG|1|a|A|1087
6SPG|1|a|G|1088
6SPG|1|a|U|1089
6SPG|1|a|C|1090

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7