HL_6SPG_096

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

ACCUCGGGU

Length

9 nucleotides

Bulged bases

6SPG|1|a|U|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_096 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3233

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SPG|1|a|A|1127
6SPG|1|a|C|1128
6SPG|1|a|C|1129
6SPG|1|a|U|1130
6SPG|1|a|C|1131
6SPG|1|a|G|1132
6SPG|1|a|G|1133
6SPG|1|a|G|1134
6SPG|1|a|U|1135

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9