HL_6SPG_108
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- AGCGUAAUAGCU
- Length
- 12 nucleotides
- Bulged bases
- 6SPG|1|A|U|1084, 6SPG|1|A|A|1085, 6SPG|1|A|A|1086, 6SPG|1|A|U|1087
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPG_108 not in the Motif Atlas
- Homologous match to HL_5J7L_212
- Geometric discrepancy: 0.5883
- The information below is about HL_5J7L_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6SPG|1|A|A|1080
6SPG|1|A|G|1081
6SPG|1|A|C|1082
6SPG|1|A|G|1083
6SPG|1|A|U|1084
6SPG|1|A|A|1085
6SPG|1|A|A|1086
6SPG|1|A|U|1087
6SPG|1|A|A|1088
6SPG|1|A|G|1089
6SPG|1|A|C|1090
6SPG|1|A|U|1091
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L11
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