HL_6SV4_013

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCCCAUUCGGGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_013 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.3981

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6SV4|1|2|G|487
6SV4|1|2|G|488
6SV4|1|2|C|489
6SV4|1|2|C|490
6SV4|1|2|C|491
6SV4|1|2|A|492
6SV4|1|2|U|493
6SV4|1|2|U|494
6SV4|1|2|C|495
6SV4|1|2|G|496
6SV4|1|2|G|497
6SV4|1|2|G|498
6SV4|1|2|U|499
6SV4|1|2|C|500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain g

40S ribosomal protein S30-A