HL_6SV4_020

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_020 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.1434

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6SV4|1|2|A|900
6SV4|1|2|G|901
6SV4|1|2|G|902
6SV4|1|2|U|903
6SV4|1|2|G|904
6SV4|1|2|A|905
6SV4|1|2|A|906
6SV4|1|2|A|907
6SV4|1|2|U|908
6SV4|1|2|U|909

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Rps5p

Chain Z

40S ribosomal protein S14-A

Chain e

40S ribosomal protein S26-A