HL_6SV4_061

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_061 not in the Motif Atlas

Geometric match to HL_5VW1_003

Geometric discrepancy: 0.1397

The information below is about HL_5VW1_003

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6SV4|1|2b|A|1084
6SV4|1|2b|G|1085
6SV4|1|2b|A|1086
6SV4|1|2b|A|1087
6SV4|1|2b|A|1088
6SV4|1|2b|U|1089

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Rb

40S ribosomal protein S2

Chain bb

40S ribosomal protein S22-A

Chain eb

40S ribosomal protein S26-A