HL_6SV4_062

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_062 not in the Motif Atlas

Geometric match to HL_4NLF_001

Geometric discrepancy: 0.1173

The information below is about HL_4NLF_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6SV4|1|2b|C|1121
6SV4|1|2b|G|1122
6SV4|1|2b|C|1123
6SV4|1|2b|A|1124
6SV4|1|2b|A|1125
6SV4|1|2b|G|1126

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain XS

60S ribosomal protein L41-B

Chain XT

60S ribosomal protein L43-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA