HL_6SV4_098

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_098 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.2416

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SV4|1|2c|A|1084
6SV4|1|2c|G|1085
6SV4|1|2c|A|1086
6SV4|1|2c|A|1087
6SV4|1|2c|A|1088
6SV4|1|2c|U|1089

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Rc

40S ribosomal protein S2

Chain bc

40S ribosomal protein S22-A

Chain ec

40S ribosomal protein S26-A