HL_6SV4_107
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6SV4|1|2c|U|1554, 6SV4|1|2c|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_107 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.5046
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|2c|A|1550
6SV4|1|2c|U|1551
6SV4|1|2c|U|1552
6SV4|1|2c|G|1553
6SV4|1|2c|U|1554
6SV4|1|2c|A|1555
6SV4|1|2c|A|1556
6SV4|1|2c|U|1557
6SV4|1|2c|U|1558
6SV4|1|2c|A|1559
6SV4|1|2c|U|1560
6SV4|1|2c|U|1561
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Ec
- 40S ribosomal protein S15
- Chain Hc
- 40S ribosomal protein S18-A
- Chain Ic
- 40S ribosomal protein S19-A
- Chain Mc
- 40S ribosomal protein S29-A
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