HL_6SV4_117
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|BQ|G|218, 6SV4|1|BQ|A|219, 6SV4|1|BQ|G|220
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_117 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.0825
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6SV4|1|BQ|G|216
6SV4|1|BQ|U|217
6SV4|1|BQ|G|218
6SV4|1|BQ|A|219
6SV4|1|BQ|G|220
6SV4|1|BQ|A|221
6SV4|1|BQ|A|222
6SV4|1|BQ|U|223
6SV4|1|BQ|C|224
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: