HL_6SV4_133

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6SV4|1|BQ|A|1025, 6SV4|1|BQ|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_133 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2415

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SV4|1|BQ|C|1023
6SV4|1|BQ|G|1024
6SV4|1|BQ|A|1025
6SV4|1|BQ|A|1026
6SV4|1|BQ|A|1027
6SV4|1|BQ|U|1028
6SV4|1|BQ|G|1029

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-A

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A