HL_6SV4_154

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAC

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_154 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.3987

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.4

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

6SV4|1|BQ|G|1952
6SV4|1|BQ|G|1953
6SV4|1|BQ|A|2093
6SV4|1|BQ|C|2094

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A