HL_6SV4_160

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6SV4|1|BQ|U|2298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_160 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.1283

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SV4|1|BQ|U|2292
6SV4|1|BQ|C|2293
6SV4|1|BQ|U|2294
6SV4|1|BQ|A|2295
6SV4|1|BQ|A|2296
6SV4|1|BQ|U|2297
6SV4|1|BQ|U|2298
6SV4|1|BQ|A|2299
6SV4|1|BQ|G|2300

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

60S ribosomal protein L23-A