HL_6SV4_164
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUUCG
- Length
- 6 nucleotides
- Bulged bases
- 6SV4|1|BQ|U|2571
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_164 not in the Motif Atlas
- Homologous match to HL_9PN5_051
- Geometric discrepancy: 0.5497
- The information below is about HL_9PN5_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56131.4
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
6SV4|1|BQ|C|2568
6SV4|1|BQ|A|2569
6SV4|1|BQ|U|2570
6SV4|1|BQ|U|2571
6SV4|1|BQ|C|2572
6SV4|1|BQ|G|2573
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AN
- 60S ribosomal protein L27-A
Coloring options: