HL_6SV4_195
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|YQ|G|218, 6SV4|1|YQ|A|219, 6SV4|1|YQ|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_195 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1332
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6SV4|1|YQ|G|216
6SV4|1|YQ|U|217
6SV4|1|YQ|G|218
6SV4|1|YQ|A|219
6SV4|1|YQ|G|220
6SV4|1|YQ|A|221
6SV4|1|YQ|A|222
6SV4|1|YQ|U|223
6SV4|1|YQ|C|224
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XK
- 60S ribosomal protein L26-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: