HL_6SV4_202

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6SV4|1|YQ|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_202 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1365

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6SV4|1|YQ|U|640
6SV4|1|YQ|C|641
6SV4|1|YQ|U|642
6SV4|1|YQ|U|643
6SV4|1|YQ|G|644
6SV4|1|YQ|A|645
6SV4|1|YQ|A|646
6SV4|1|YQ|A|647
6SV4|1|YQ|C|648
6SV4|1|YQ|A|649

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XR

60S ribosomal protein L28

Chain YA

60S ribosomal protein L3

Chain YG

60S ribosomal protein L32