HL_6SV4_226

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_226 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1163

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6SV4|1|YQ|G|1719
6SV4|1|YQ|U|1720
6SV4|1|YQ|U|1721
6SV4|1|YQ|U|1722
6SV4|1|YQ|A|1723
6SV4|1|YQ|U|1724
6SV4|1|YQ|C|1725

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XT

60S ribosomal protein L43-A

Chain YF

60S ribosomal protein L19-A