HL_6SV4_231

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6SV4|1|YQ|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_231 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1223

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

6SV4|1|YQ|C|1923
6SV4|1|YQ|U|1924
6SV4|1|YQ|U|1925
6SV4|1|YQ|C|1926
6SV4|1|YQ|G|1927
6SV4|1|YQ|G|1928

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain XS

60S ribosomal protein L41-B

Chain XT

60S ribosomal protein L43-A