HL_6SV4_239

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6SV4|1|YQ|A|2372, 6SV4|1|YQ|A|2373, 6SV4|1|YQ|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_239 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0964

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6SV4|1|YQ|G|2369
6SV4|1|YQ|G|2370
6SV4|1|YQ|G|2371
6SV4|1|YQ|A|2372
6SV4|1|YQ|A|2373
6SV4|1|YQ|C|2374
6SV4|1|YQ|G|2375
6SV4|1|YQ|G|2376
6SV4|1|YQ|G|2377
6SV4|1|YQ|C|2378

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XU

60S ribosomal protein L16-A

Chain YA

60S ribosomal protein L3

Chain YG

60S ribosomal protein L32