HL_6SV4_247
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_247 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1766
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|YQ|U|2724
6SV4|1|YQ|U|2725
6SV4|1|YQ|C|2726
6SV4|1|YQ|A|2727
6SV4|1|YQ|G|2728
6SV4|1|YQ|U|2729
6SV4|1|YQ|G|2730
6SV4|1|YQ|U|2731
6SV4|1|YQ|G|2732
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XP
- 60S ribosomal protein L42-A
- Chain XR
- 60S ribosomal protein L28
- Chain YB
- 60S ribosomal protein L18-A
- Chain YJ
- 60S ribosomal protein L21-A
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