HL_6SV4_250

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_250 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.185

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SV4|1|YQ|C|2840
6SV4|1|YQ|G|2841
6SV4|1|YQ|U|2842
6SV4|1|YQ|U|2843
6SV4|1|YQ|C|2844
6SV4|1|YQ|A|2845
6SV4|1|YQ|U|2846
6SV4|1|YQ|A|2847
6SV4|1|YQ|G|2848

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XO

Ubiquitin-60S ribosomal protein L40

Chain YD

60S ribosomal protein L10