HL_6SV4_262
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_262 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.159
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6SV4|1|YR|G|88
6SV4|1|YR|G|89
6SV4|1|YR|U|90
6SV4|1|YR|G|91
6SV4|1|YR|A|92
6SV4|1|YR|C|93
Current chains
- Chain YR
- 5S rRNA
Nearby chains
- Chain YD
- 60S ribosomal protein L10
- Chain YH
- 60S ribosomal protein L20-A
- Chain YO
- 60S ribosomal protein L7-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: