HL_6SV4_270

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6SV4|1|ZQ|U|133, 6SV4|1|ZQ|C|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_270 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1722

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6SV4|1|ZQ|C|132
6SV4|1|ZQ|U|133
6SV4|1|ZQ|U|134
6SV4|1|ZQ|C|135
6SV4|1|ZQ|G|136

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZP

60S ribosomal protein L35-A

Chain zQ

60S ribosomal protein L15-A