HL_6SV4_274

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

6SV4|1|ZQ|G|283, 6SV4|1|ZQ|A|284, 6SV4|1|ZQ|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_274 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1187

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SV4|1|ZQ|U|278
6SV4|1|ZQ|U|279
6SV4|1|ZQ|U|280
6SV4|1|ZQ|G|281
6SV4|1|ZQ|G|282
6SV4|1|ZQ|G|283
6SV4|1|ZQ|A|284
6SV4|1|ZQ|A|285
6SV4|1|ZQ|U|286
6SV4|1|ZQ|G|287

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zJ

60S ribosomal protein L13-A

Chain zP

60S ribosomal protein L42-A

Chain zQ

60S ribosomal protein L15-A

Chain zR

60S ribosomal protein L28