HL_6SV4_278

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6SV4|1|ZQ|U|545, 6SV4|1|ZQ|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_278 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3997

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|G|542
6SV4|1|ZQ|C|543
6SV4|1|ZQ|C|544
6SV4|1|ZQ|U|545
6SV4|1|ZQ|C|546
6SV4|1|ZQ|G|547
6SV4|1|ZQ|G|548
6SV4|1|ZQ|U|549

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zD

60S ribosomal protein L9-A