HL_6SV4_293

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6SV4|1|ZQ|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_293 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4315

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6SV4|1|ZQ|C|1239
6SV4|1|ZQ|A|1240
6SV4|1|ZQ|U|1241
6SV4|1|ZQ|G|1242
6SV4|1|ZQ|G|1243
6SV4|1|ZQ|A|1244
6SV4|1|ZQ|A|1245
6SV4|1|ZQ|G|1246
6SV4|1|ZQ|U|1247
6SV4|1|ZQ|C|1248
6SV4|1|ZQ|G|1249

Current chains

Chain ZQ

25S rRNA

Nearby chains